Kutmon, Martina : rechercher sur Z-Library

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1

WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research

Slenter, Denise N, Kutmon, Martina, Hanspers, Kristina, Riutta, Anders, Windsor, Jacob, Nunes, Nuno, Mélius, Jonathan, Cirillo, Elisa, Coort, Susan L, Digles, Daniela, Ehrhart, Friederike, Giesbertz,

Journal:

Nucleic Acids Research

Année:

2018

Langue:

english

Fichier:

PDF, 839 KB

english, 2018

2

Comprehensive bioinformatics analysis of trabecular meshwork gene expression data to unravel the molecular pathogenesis of primary open‐angle glaucoma

Liesenborghs, Ilona, Eijssen, Lars M. T., Kutmon, Martina, Gorgels, Theo G. M. F., Evelo, Chris T., Beckers, Henny J. M., Webers, Carroll A. B., Schouten, Johannes S. A. G.

Journal:

Acta Ophthalmologica (Blackwell)

Année:

2019

Langue:

english

Fichier:

PDF, 815 KB

english, 2019

3

Stratifying cellular metabolism during weight loss: an interplay of metabolism, metabolic flexibility and inflammation

Tareen, Samar H. K., Kutmon, Martina, de Kok, Theo M., Mariman, Edwin C. M., van Baak, Marleen A., Evelo, Chris T., Adriaens, Michiel E., Arts, Ilja C. W.

Journal:

Scientific Reports

Année:

2020

Langue:

english

Fichier:

PDF, 1.10 MB

english, 2020

4

A pathway approach to investigate the function and regulation of SREBPs

Sabine Daemen, Martina Kutmon, Chris T. Evelo

Journal:

Genes & Nutrition

Année:

2013

Langue:

english

Fichier:

PDF, 394 KB

english, 2013

5

A network biology workflow to study transcriptomics data of the diabetic liver

Kutmon, Martina, Evelo, Chris T, Coort, Susan L

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 2.16 MB

english, 2014

6

PathVisio 3: An Extendable Pathway Analysis Toolbox

Kutmon, Martina, van Iersel, Martijn P., Bohler, Anwesha, Kelder, Thomas, Nunes, Nuno, Pico, Alexander R., Evelo, Chris T., Murphy, Robert F.

Journal:

PLoS Computational Biology

Année:

2015

Langue:

english

Fichier:

PDF, 1.66 MB

english, 2015

7

Integrative network-based analysis of mRNA and microRNA expression in 1,25-dihydroxyvitamin D3-treated cancer cells

Kutmon, Martina, Coort, Susan L., de Nooijer, Kim, Lemmens, Claire, Evelo, Chris T.

Journal:

Genes & Nutrition

Année:

2015

Langue:

english

Fichier:

PDF, 2.17 MB

english, 2015

8

Automatically visualise and analyse data on pathways using PathVisioRPC from any programming environment

Bohler, Anwesha, Eijssen, Lars M. T., van Iersel, Martijn P., Leemans, Christ, Willighagen, Egon L., Kutmon, Martina, Jaillard, Magali, Evelo, Chris T.

Journal:

BMC Bioinformatics

Année:

2015

Langue:

english

Fichier:

PDF, 2.03 MB

english, 2015

9

WikiPathways: capturing the full diversity of pathway knowledge

Kutmon, Martina, Riutta, Anders, Nunes, Nuno, Hanspers, Kristina, Willighagen, Egon L., Bohler, Anwesha, Mélius, Jonathan, Waagmeester, Andra, Sinha, Sravanthi R., Miller, Ryan, Coort, Susan L., Ciril

Journal:

Nucleic Acids Research

Année:

2016

Langue:

english

Fichier:

PDF, 1.42 MB

english, 2016

10

The systems biology format converter

Rodriguez, Nicolas, Pettit, Jean-Baptiste, Dalle Pezze, Piero, Li, Lu, Henry, Arnaud, van Iersel, Martijn P., Jalowicki, Gael, Kutmon, Martina, Natarajan, Kedar N., Tolnay, David, Stefan, Melanie I.,

Journal:

BMC Bioinformatics

Année:

2016

Langue:

english

Fichier:

PDF, 1.90 MB

english, 2016

11

Visualizing the regulatory role of Angiopoietin-like protein 8 (ANGPTL8) in glucose and lipid metabolic pathways

Siddiqa, Amnah, Cirillo, Elisa, Tareen, Samar H.K., Ali, Amjad, Kutmon, Martina, Eijssen, Lars M.T., Ahmad, Jamil, Evelo, Chris T., Coort, Susan L.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.00 MB

english, 2017

12

Sexual dimorphism, age and fat mass are key phenotypic drivers of proteomic signatures

Curran, Aoife M, Fogarty Draper, Colleen, Scott-Boyer, Marie-Pier, Valsesia, Armand, Roche, Helen M., Ryan, Miriam F, Gibney, Michael J., Kutmon, Martina, Evelo, Chris T., Coort, Susan L., Astrup, Arn

Journal:

Journal of Proteome Research

Année:

2017

Langue:

english

Fichier:

PDF, 796 KB

english, 2017

13

Pathway analysis of transcriptomic data shows immunometabolic effects of vitamin D

Muñoz Garcia, Amadeo, Kutmon, Martina, Eijssen, Lars, Hewison, Martin, Evelo, Chris T., Coort, Susan L.

Journal:

Journal of Molecular Endocrinology

Année:

2017

Langue:

english

Fichier:

PDF, 1.60 MB

english, 2017

14

Integrated visualization of a multi-omics study of starvation in mouse intestine

Iersel, Martijn P. van, Sokolović, Milka, Lenaerts, Kaatje, Kutmon, Martina, Bouwman, Freek G., Lamers, Wouter H., Mariman, Edwin C.M., Evelo, Chris T.

Journal:

Journal of Integrative Bioinformatics

Année:

2014

Langue:

english

Fichier:

PDF, 465 KB

english, 2014

15

Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources

Waagmeester, Andra, Kutmon, Martina, Riutta, Anders, Miller, Ryan, Willighagen, Egon L., Evelo, Chris T., Pico, Alexander R., Ouzounis, Christos A.

Journal:

PLoS Computational Biology

Année:

2016

Langue:

english

Fichier:

PDF, 974 KB

english, 2016

16

CyTargetLinker: A Cytoscape App to Integrate Regulatory Interactions in Network Analysis

Kutmon, Martina, Kelder, Thomas, Mandaviya, Pooja, Evelo, Chris T. A., Coort, Susan L., Vera, Julio

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 1.44 MB

english, 2013

17

Exploring the cellular network of metabolic flexibility in the adipose tissue

Tareen, Samar H. K., Kutmon, Martina, Adriaens, Michiel E., Mariman, Edwin C. M., de Kok, Theo M., Arts, Ilja C. W., Evelo, Chris T.

Journal:

Genes & Nutrition

Année:

2018

Langue:

english

Fichier:

PDF, 988 KB

english, 2018

18

From SNPs to pathways: Biological interpretation of type 2 diabetes (T2DM) genome wide association study (GWAS) results

Cirillo, Elisa, Kutmon, Martina, Gonzalez Hernandez, Manuel, Hooimeijer, Tom, Adriaens, Michiel E., Eijssen, Lars M. T., Parnell, Laurence D., Coort, Susan L., Evelo, Chris T., Huang, Qingyang

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 1.75 MB

english, 2018

19

Profiling Cellular Processes in Adipose Tissue during Weight Loss Using Time Series Gene Expression

Tareen, Samar, Adriaens, Michiel, Arts, Ilja, de Kok, Theo, Vink, Roel, Roumans, Nadia, van Baak, Marleen, Mariman, Edwin, Evelo, Chris, Kutmon, Martina

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 685 KB

english, 2018

20

Beyond Pathway Analysis: Identification of Active Subnetworks in Rett Syndrome

Miller, Ryan A., Ehrhart, Friederike, Eijssen, Lars M. T., Slenter, Denise N., Curfs, Leopold M. G., Evelo, Chris T., Willighagen, Egon L., Kutmon, Martina

Journal:

Frontiers in Genetics

Année:

2019

Fichier:

PDF, 2.86 MB

2019

21

Beyond Pathway Analysis: Identification of Active Subnetworks in Rett Syndrome

Miller, Ryan A., Ehrhart, Friederike, Eijssen, Lars M. T., Slenter, Denise N., Curfs, Leopold M. G., Evelo, Chris T., Willighagen, Egon L., Kutmon, Martina

Journal:

Frontiers in Genetics

Année:

2019

Langue:

english

Fichier:

PDF, 2.86 MB

english, 2019

22

The Importance of Modularity in Bioinformatics Tools

Kutmon, Martina, van Iersel, Martijn, Kelder, Thomas, Evelo, Chris

Journal:

Bioentrepreneur

Année:

2011

Langue:

english

Fichier:

PDF, 241 KB

english, 2011

23

The System Biology Format Converter

Jalowicki, Gaël, Rodriguez, Nicolas, Kutmon, Martina, Pettit, Jean-Baptiste, Li, Lu, Henry, Arnaud, Nath Natarajan, Kedar, Laibe, Camille, Evelo, Chris T., Le Novère, Nicolas

Journal:

Bioentrepreneur

Année:

2011

Fichier:

PDF, 11.75 MB

2011

24

SBFC - The Systems Biology Format Converter Framework

Kutmon, Martina, Rodriguez, Nicolas

Journal:

Bioentrepreneur

Année:

2011

Langue:

english

Fichier:

PDF, 249 KB

english, 2011

25

Improving metabolite evaluation in integrated pathway analysis

Kaur, Rasanpreet, Dutta, Anwesha, Kutmon, Martina, Iersel, Martijn, Evelo, Chris

Journal:

Bioentrepreneur

Année:

2012

Fichier:

PDF, 4.92 MB

2012

26

The Importance of Modularity in Bioinformatics Tools

Kutmon, Martina, van Iersel, Martijn, Kelder, Thomas, Evelo, Chris

Journal:

Bioentrepreneur

Année:

2011

Fichier:

PDF, 241 KB

2011

27

The System Biology Format Converter

Jalowicki, Gaël, Rodriguez, Nicolas, Kutmon, Martina, Pettit, Jean-Baptiste, Li, Lu, Henry, Arnaud, Nath Natarajan, Kedar, Laibe, Camille, Evelo, Chris T., Le Novère, Nicolas

Journal:

Bioentrepreneur

Année:

2011

Fichier:

PDF, 11.75 MB

2011

28

SBFC - The Systems Biology Format Converter Framework

Kutmon, Martina, Rodriguez, Nicolas

Journal:

Bioentrepreneur

Année:

2011

Fichier:

PDF, 249 KB

2011

29

Improving metabolite evaluation in integrated pathway analysis

Kaur, Rasanpreet, Dutta, Anwesha, Kutmon, Martina, Iersel, Martijn, Evelo, Chris

Journal:

Bioentrepreneur

Année:

2012

Fichier:

PDF, 4.92 MB

2012

30

Identification of Biological Pathways Contributing to Marbling in Skeletal Muscle to Improve Beef Cattle Breeding

Roudbari, Zahra, Coort, Susan L., Kutmon, Martina, Eijssen, Lars, Melius, Jonathan, Sadkowski, Tomasz, Evelo, Chris T.

Journal:

Frontiers in Genetics

Année:

2020

Langue:

english

Fichier:

PDF, 2.80 MB

english, 2020

31

The Molecular Processes in the Trabecular Meshwork After Exposure to Corticosteroids and in Corticosteroid-Induced Ocular Hypertension

Liesenborghs, Ilona, Eijssen, Lars M. T., Kutmon, Martina, Gorgels, Theo G. M. F., Evelo, Chris T., Beckers, Henny J. M., Webers, Carroll A. B., Schouten, Johannes S. A. G.

Journal:

Investigative Opthalmology & Visual Science

Année:

2020

Fichier:

PDF, 3.22 MB

2020

32

Pathway information extracted from 25 years of pathway figures

Hanspers, Kristina, Riutta, Anders, Summer-Kutmon, Martina, Pico, Alexander R.

Journal:

Année:

2020

Fichier:

PDF, 1.69 MB

2020